PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015900498.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YB
Protein Properties Length: 247aa    MW: 27066 Da    PI: 5.9563
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015900498.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB166.92.6e-5267163197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqd+++Pianv+rim+++lP++akis+daket+qecvse+isfvt+ea+++cqre+rkt++++d+lwa+++lGf+dyv+pl+++l++yr+ e+
  XP_015900498.1  67 VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTVTAEDILWAMGKLGFDDYVQPLTLFLTRYRDSES 161
                     69********************************************************************************************9 PP

           NF-YB  96 ek 97 
                     ++
  XP_015900498.1 162 DR 163
                     97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-4665167IPR009072Histone-fold
SuperFamilySSF471134.35E-3570170IPR009072Histone-fold
PfamPF008088.0E-2673137IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.2E-15101119No hitNo description
PROSITE patternPS006850104120IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.2E-15120138No hitNo description
PRINTSPR006154.2E-15139157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010262Biological Processsomatic embryogenesis
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MERMGGFGFY RKHAKSSSTV LEVVQTNNTT TDDTTKTATG AGDGAGNSTT NTTNNPQEPE  60
RALVCMVREQ DQYMPIANVI RIMRRILPSH AKISDDAKET IQECVSEYIS FVTGEANERC  120
QREQRKTVTA EDILWAMGKL GFDDYVQPLT LFLTRYRDSE SDRTSVRVEP PAATFVRRGA  180
AAAEYGPVQV GVHGPYVPGF HVGHYPNVFD APASAMGGYY RDESGGAGTG SSSQNAMANF  240
DPFAHFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-3868158393NF-YB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900498.10.0PREDICTED: nuclear transcription factor Y subunit B-9-like
SwissprotQ9SFD82e-67NFYB9_ARATH; Nuclear transcription factor Y subunit B-9
TrEMBLA0A061FC041e-86A0A061FC04_THECC; Ccaat-binding transcription factor subunit A, putative
STRINGVIT_00s0956g00020.t012e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27283279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.14e-65NF-YB family protein